bin/bamsurgeon
bin/generate_signature.pl
bin/germline.pl
bin/get_coverage.R
bin/make_yaml_het.pl
Build.PL
lib/NGS/Tools/BAMSurgeon.pm
lib/NGS/Tools/BAMSurgeon/Germline.pm
lib/NGS/Tools/BAMSurgeon/Helper.pm
lib/NGS/Tools/BAMSurgeon/Merge.pm
lib/NGS/Tools/BAMSurgeon/Somatic.pm
MANIFEST			This list of files
share/cancer_mut_vary.yaml
share/cancer_sig_vary.yaml
share/cancer_sigmut.yaml
share/config.yaml
share/germ_mut.yaml
share/imputed_byref.csv
share/replicationtime_mutationrate.csv
share/signatures.txt
share/somatic.yaml
share/template.yaml
t/00-bamsurgeon.t
META.yml
META.json
